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#biohackeu24

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Egon Willighagen<p>new report/preprint: "BioHackEU24 report: <span class="h-card" translate="no"><a href="https://scicomm.xyz/@ORCID_Org" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>ORCID_Org</span></a></span> and <span class="h-card" translate="no"><a href="https://mastodon.social/@ResearchOrgs" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>ResearchOrgs</span></a></span> identifiers in BioHackrXiv reports" <a href="https://doi.org/10.37044/osf.io/p9u42_v1" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.37044/osf.io/p9u42_</span><span class="invisible">v1</span></a></p><p>"As part of the BioHackathon Europe 2024, we here report on two improvements of theplatform: visualization of the ORCID identifiers in the preprint PDF and support for ResearchOrganization Registry (ROR) identifiers of the affiliations, see <a href="https://ror.org/about/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">ror.org/about/</span><span class="invisible"></span></a>."</p><p><a href="https://social.edu.nl/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://social.edu.nl/tags/preprint" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>preprint</span></a> <a href="https://social.edu.nl/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> <a href="https://social.edu.nl/tags/ELIXIREurope" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ELIXIREurope</span></a></p>
Egon Willigh☮gen 🟥<p>congrats to <a href="https://mastodon.social/tags/BioHackrXiv" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackrXiv</span></a> with their 100th preprint! <a href="https://osf.io/preprints/biohackrxiv/discover?sort=-dateCreated" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">osf.io/preprints/biohackrxiv/d</span><span class="invisible">iscover?sort=-dateCreated</span></a></p><p><a href="https://mastodon.social/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a> <a href="https://mastodon.social/tags/hackathon" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>hackathon</span></a> <a href="https://mastodon.social/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> <a href="https://mastodon.social/tags/BioHackJP24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackJP24</span></a> <a href="https://mastodon.social/tags/BioHackGermany24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackGermany24</span></a></p>
Egon Willigh☮gen 🟥<p>nice to see the first <a href="https://mastodon.social/tags/BioHackRxiv" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackRxiv</span></a> 2025 paper with Citation Typing Ontology (CiTO) annotation: "Enhancing multi-omic analyses through a federated microbiome analysis service" <a href="https://scholia.toolforge.org/work/Q131798238" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">scholia.toolforge.org/work/Q13</span><span class="invisible">1798238</span></a> <a href="https://doi.org/10.37044/osf.io/3x274" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">doi.org/10.37044/osf.io/3x274</span><span class="invisible"></span></a></p><p>BioHackRxiv: <a href="https://scholia.toolforge.org/venue/Q115450084" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">scholia.toolforge.org/venue/Q1</span><span class="invisible">15450084</span></a><br>CiTO: <a href="https://scholia.toolforge.org/cito/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">scholia.toolforge.org/cito/</span><span class="invisible"></span></a><br>ELIXIR Europe: <span class="h-card" translate="no"><a href="https://mstdn.science/@elixir_europe" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>elixir_europe</span></a></span></p><p><a href="https://mastodon.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://mastodon.social/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> <a href="https://mastodon.social/tags/ELIXIRMicrobialBiotechnology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ELIXIRMicrobialBiotechnology</span></a></p>
ELIXIR Europe<p>🎉 <a href="https://mstdn.science/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> has come to an end!</p><p>Thnak you all for joining us this year. And a special thanks to those who participated online and overseas for staying up late hacking through different projects with us 🙌.</p><p>It has been a great week with lots of fruitful outcomes and we look forward to seeing you next year for <a href="https://mstdn.science/tags/BioHackEU25" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU25</span></a> in Berlin, Germany!🥳</p>
AI4Life<p>Wrapping up a fantastic week at the <a href="https://qoto.org/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> 🎉 Project 17 worked (also) on the future integration of the BioImage Archive and BioImage Model Zoo with <a href="https://qoto.org/tags/useGalaxy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>useGalaxy</span></a>, which will enable automatic import of both images and <a href="https://qoto.org/tags/AI" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AI</span></a> models, streamlining automated <a href="https://qoto.org/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ImageAnalysis</span></a> workflows.</p>
BiGCaT Bioinformatics<p><span class="h-card" translate="no"><a href="https://mstdn.science/@elixir_europe" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>elixir_europe</span></a></span> two group members are on site: Tooba and Javi, if you want to learn about their research in our group, or possibly of other people working in our group</p><p><a href="https://social.edu.nl/tags/BioHackEU" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU</span></a> <a href="https://social.edu.nl/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a></p>
ELIXIR Europe<p>✨ The second day of <a href="https://mstdn.science/tags/BiohackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BiohackEU24</span></a> starts with lots of hacking on-site, through Zoom, and across time zones. </p><p>We made a word cloud ☁️ to summarise keywords of projects this year.<br>Guess what’s the most used keyword… <a href="https://mstdn.science/tags/DATA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DATA</span></a> 💾 along with <a href="https://mstdn.science/tags/Research" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Research</span></a>, <a href="https://mstdn.science/tags/FAIR" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>FAIR</span></a>, <a href="https://mstdn.science/tags/Galaxy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Galaxy</span></a> and <a href="https://mstdn.science/tags/ELIXIR" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ELIXIR</span></a> - which really summarise the focuses of hashtag#BioHackEU. </p><p>Tomorrow, all <a href="https://mstdn.science/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> projects will present their goals and challenges they’ve encountered and 🙌 seek expertise from participants for <a href="https://mstdn.science/tags/collaborations" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>collaborations</span></a>!</p>
DrYak<p>Chocolates are on the table, hacking can commence!</p><p><span class="h-card" translate="no"><a href="https://mstdn.science/@elixir_europe" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>elixir_europe</span></a></span> 's <a href="https://mstdn.science/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> in Barcelona</p>
Egon Willighagen<p>okay, people are heading to Barcelona for <a href="https://social.edu.nl/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> </p><p>I will join online, but a few incoming meetings I had to give priority (think teaching, general assembly), so I won't be available full time, unfortunately</p><p>But there is overlap, so as a first mutual benefit, I made a fist update to our course material giving an overview of <a href="https://social.edu.nl/tags/SPARQL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SPARQL</span></a> endpoints in the life sciences: <a href="https://bigcat-um.github.io/PRA3006-SPARQL/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">bigcat-um.github.io/PRA3006-SP</span><span class="invisible">ARQL/</span></a></p>
Jerven<p>On my way to <a href="https://akademienl.social/tags/BiohackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BiohackEU24</span></a>. I am going to help people get more out of their <a href="https://akademienl.social/tags/FAIRdata" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>FAIRdata</span></a> with project 14: FAIRly easy APIs for research data in (Bio)Schema.org and RDF <a href="https://github.com/elixir-europe/biohackathon-projects-2024/blob/main/14.md" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/elixir-europe/bioha</span><span class="invisible">ckathon-projects-2024/blob/main/14.md</span></a></p>
Egon Willigh☮gen 🟥<p>Have you used <a href="https://mastodon.social/tags/Bioschemas" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioschemas</span></a> to markup your data, tools, training materials or other content? Was it cumbersome, tedious or a joyous experience? Please share your experiences and help us to run the <span class="h-card" translate="no"><a href="https://mstdn.science/@elixir_europe" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>elixir_europe</span></a></span> BioHackathon Europe Project 10 ‘Bioschemas for Mortals’ by completing this survey before 1 November.</p><p><a href="https://mastodon.social/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a></p>
Egon Willighagen<p>September is over, October has started, and the first teaching block is slowly transforming into the second teaching block.</p><p>The coming weeks will also bring a good bit <a href="https://social.edu.nl/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>openscience</span></a></p><p>First, a <span class="h-card" translate="no"><a href="https://wikis.world/@wdscholia" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>wdscholia</span></a></span> hackathon, followed by the Open Science Festival <a href="https://social.edu.nl/tags/OSF2024NL" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OSF2024NL</span></a> (in 9 days!), and then later this month the BioHackathon Europe <a href="https://social.edu.nl/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a></p>
GHGA<p>Have a new <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> project idea in your mind? Want to meet with other <a href="https://genomic.social/tags/programmers" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>programmers</span></a> to stimulate your work? </p><p>Submit your project proposal for <a href="https://genomic.social/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> organised by <span class="h-card" translate="no"><a href="https://mstdn.science/@elixir_europe" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>elixir_europe</span></a></span> !</p><p>Submission deadline 8 April: <a href="https://loom.ly/5gopDeQ" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">loom.ly/5gopDeQ</span><span class="invisible"></span></a></p>
ELIXIR Europe<p>⚡ Do you have a <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> project idea that needs a little stimulus?<br>📥 Submit your project proposal for <a href="https://mstdn.science/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a> to get the chance to meet with experts to drive the project forward.💨</p><p>You will need to address three main areas in your proposal:<br>🔵 Scope and vision of your project<br>🔵 Alignment with the newly commenced ELIXIR 2024-26 Programme and beyond<br>🔵 Feasibility of your proposal</p><p>More information and the submission link can be found on BioHackathon website: <a href="https://lnkd.in/etVTQxeW" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">lnkd.in/etVTQxeW</span><span class="invisible"></span></a></p>
ELIXIR Europe<p>🎉 <a href="https://mstdn.science/tags/BioHackEU23" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU23</span></a> has come to an end!<br>Thank you all for joining us this year. And a special thanks to those who participated online and overseas for staying up late hacking through different projects with us 🙌.<br>👏 It’s amazing to see over 300 participants hacking their way through 35 projects, creating new <a href="https://mstdn.science/tags/opensource" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>opensource</span></a> features, code and resources for <a href="https://mstdn.science/tags/lifescience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>lifescience</span></a> researchers.<br>It has been a great week with lots of fruitful outcomes and we look forward to seeing you next year for <a href="https://mstdn.science/tags/BioHackEU24" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioHackEU24</span></a>!🥳</p>
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